Allows you to analyze data from viral sequences.Segminator is a tool for extracting data from reads generated using the 454 Life Science sequencing platform [1]. A number of options are available to the user through the interface including:
- Obtaining nucleotide and amino acid residue frequencies at sites across the template.
- Generating a consensus across data set using overlapping windows (while allowing for indels differing from those in relation to the template).
- Removal of reads based on hamming distance cutoff thresholds.
- Reads spanning a particular region of the template can be multiply aligned and used to infer phylogenetic trees.
- Identification of variants within viral populations.
Requirements:
• Java
Operating system:Windows 8, Windows 7, Windows Vista, Windows XP, Windows 2000, Windows 98
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